PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00012203-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 274aa    MW: 30403 Da    PI: 9.0735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00012203-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08169209954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  WALNUT_00012203-RA 169 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 209
                         699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14161219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14164219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-6170209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.60E-6183214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDVDMLRSSA GDHMDMMTMM MQMEKLPEFC DAFHDTPTYP AEIEFSDGST SSVTTTPPIF  60
HSSPNKMAPP TLENPPASLP FMGSTPTIHE PLSLRPPDQR FRNNIASSGT ALSLPNNSYH  120
DQKNSSMVEM REMIFRIAAM QPILIDPESI KPPKRRNVKI SKDPQSVAAR HRRERISERI  180
RILQRLVPGG TKMDTASMLD EAIHYVKFLK KQVQTLEQAG TKRTVLGVGF PVGMKNANVV  240
SYSSLAKAAC SNGAGVLYPN AQQLGHERDL VGFM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425907.12e-90hypothetical protein CICLE_v10026967mg
SwissprotQ9FHA73e-50HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A067GKM33e-91A0A067GKM3_CITSI; Uncharacterized protein
STRINGPOPTR_0007s10950.14e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-41bHLH family protein